Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs6784462 chr3:97187954 G/A 9.72E-7 499 31.47 33.87 29.17 KM Plot
THCA rs67856656 chr2:87000387 T/G 4.89E-9 501 32.35 27.85 14.73 KM Plot
THCA rs67864369 chr2:87007425 G/A 1.02E-10 487 31.92 27.7 20.78 KM Plot
THCA rs68001503 chr2:238438658 G/A 3.7E-8 497 31.53 31.47 34.1 KM Plot
THCA rs68041339 chr19:9818851 A/G 4.26E-6 503 31.42 33.53 32.9 KM Plot
THCA rs6813952 chr4:74844432 A/C 1.19E-5 503 31.53 31.7 23.23 KM Plot
THCA rs6819202 chr4:3368264 G/A 0.000126 492 27.1 31.47 33.08 KM Plot
THCA rs6867346 chr5:178257027 G/T 2.88E-5 503 24.9 33.97 31.47 KM Plot
THCA rs6881238 chr5:178247211 T/TAC 2.87E-5 503 31.47 34.4 24.9 KM Plot
THCA rs6881428 chr5:178257017 C/T 0.000113 503 31.47 32.9 17.7 KM Plot
THCA rs6885031 chr5:178260403 T/C 2.97E-5 500 31.47 32.9 24.9 KM Plot
THCA rs6910639 chr6:133120553 A/G 1.36E-7 498 31.47 32.43 30.53 KM Plot
THCA rs6911773 chr6:133128848 T/C 0 502 31.47 35.2 29.05 KM Plot
THCA rs6924403 chr6:133140338 A/G 3.2E-5 503 31.47 33.27 50 KM Plot
THCA rs6927991 chr6:133113888 T/G 1.11E-16 496 31.47 35.2 29.05 KM Plot